IL_3CCQ_013

3D structure

PDB id

3CCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

3CCQ|1|0|U|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCQ_013 not in the Motif Atlas

Homologous match to IL_4V9F_013

Geometric discrepancy: 0.061

The information below is about IL_4V9F_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3CCQ|1|0|G|307
3CCQ|1|0|U|308
3CCQ|1|0|C|309
*
3CCQ|1|0|G|322
3CCQ|1|0|C|323

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain T

50S ribosomal protein L24P

Chain Y

50S ribosomal protein L32e