3D structure

PDB id
3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUAAG*CGAAAUG
Length
12 nucleotides
Bulged bases
3CCQ|1|0|A|1486
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CCQ_051 not in the Motif Atlas
Homologous match to IL_4V9F_052
Geometric discrepancy: 0.0405
The information below is about IL_4V9F_052
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_70627.3
Basepair signature
cWW-L-R-tHW-cWW
Number of instances in this motif group
3

Unit IDs

3CCQ|1|0|C|1456
3CCQ|1|0|U|1457
3CCQ|1|0|A|1458
3CCQ|1|0|A|1459
3CCQ|1|0|G|1460
*
3CCQ|1|0|C|1483
3CCQ|1|0|G|1484
3CCQ|1|0|A|1485
3CCQ|1|0|A|1486
3CCQ|1|0|A|1487
3CCQ|1|0|U|1488
3CCQ|1|0|G|1489

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain 1
50S ribosomal protein L37e
Chain 2
50S ribosomal protein L39e
Chain A
50S ribosomal protein L2P

Coloring options:


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