3D structure

PDB id
3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CGAG*CGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CCQ_097 not in the Motif Atlas
Geometric match to IL_4V9F_100
Geometric discrepancy: 0.0837
The information below is about IL_4V9F_100
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_58355.2
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
43

Unit IDs

3CCQ|1|0|C|2873
3CCQ|1|0|G|2874
3CCQ|1|0|A|2875
3CCQ|1|0|G|2876
*
3CCQ|1|0|C|2881
3CCQ|1|0|G|2882
3CCQ|1|0|A|2883
3CCQ|1|0|G|2884

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain P
50S ribosomal protein L19e

Coloring options:


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