IL_3CCQ_109
3D structure
- PDB id
- 3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGAGUAC*GGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CCQ_109 not in the Motif Atlas
- Homologous match to IL_8P9A_369
- Geometric discrepancy: 0.2409
- The information below is about IL_8P9A_369
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
3CCQ|1|9|G|74
3CCQ|1|9|G|75
3CCQ|1|9|G|76
3CCQ|1|9|A|77
3CCQ|1|9|G|78
3CCQ|1|9|U|79
3CCQ|1|9|A|80
3CCQ|1|9|C|81
*
3CCQ|1|9|G|101
3CCQ|1|9|G|102
3CCQ|1|9|A|103
3CCQ|1|9|A|104
3CCQ|1|9|A|105
3CCQ|1|9|U|106
3CCQ|1|9|C|107
Current chains
- Chain 9
- 5S RIBOSOMAL RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 50S ribosomal protein L10e
- Chain W
- 50S ribosomal protein L30P
Coloring options: