IL_3CCV_084

3D structure

PDB id

3CCV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2616A

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUC*GUGAG

Length

8 nucleotides

Bulged bases

3CCV|1|0|G|2611, 3CCV|1|0|A|2612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCV_084 not in the Motif Atlas

Homologous match to IL_4V9F_087

Geometric discrepancy: 0.0486

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

3CCV|1|0|U|2545
3CCV|1|0|U|2546
3CCV|1|0|C|2547
*
3CCV|1|0|G|2609
3CCV|1|0|U|2610
3CCV|1|0|G|2611
3CCV|1|0|A|2612
3CCV|1|0|G|2613

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P