IL_3CD6_088

3D structure

PDB id

3CD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

3CD6|1|0|A|2637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CD6_088 not in the Motif Atlas

Geometric match to IL_1CSL_002

Geometric discrepancy: 0.3295

The information below is about IL_1CSL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

3CD6|1|0|C|2626
3CD6|1|0|G|2627
*
3CD6|1|0|C|2636
3CD6|1|0|A|2637
3CD6|1|0|G|2638

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 4

RNA (5'-R(*CP*CP*(PPU))-3')

Chain A

50S ribosomal protein L2P