IL_3CD6_094

3D structure

PDB id

3CD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

3CD6|1|0|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CD6_094 not in the Motif Atlas

Homologous match to IL_4V9F_096

Geometric discrepancy: 0.0372

The information below is about IL_4V9F_096

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

3CD6|1|0|G|2772
3CD6|1|0|G|2773
3CD6|1|0|U|2774
3CD6|1|0|A|2775
3CD6|1|0|A|2776
3CD6|1|0|G|2777
*
3CD6|1|0|C|2797
3CD6|1|0|G|2798
3CD6|1|0|A|2799
3CD6|1|0|A|2800
3CD6|1|0|A|2801
3CD6|1|0|C|2802

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P