IL_3CF5_006
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CF5_006 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.0995
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
3CF5|1|X|G|165
3CF5|1|X|G|166
3CF5|1|X|A|167
3CF5|1|X|A|168
3CF5|1|X|C|169
3CF5|1|X|U|170
3CF5|1|X|G|171
*
3CF5|1|X|C|178
3CF5|1|X|U|179
3CF5|1|X|C|180
3CF5|1|X|A|181
3CF5|1|X|G|182
3CF5|1|X|U|183
3CF5|1|X|A|184
3CF5|1|X|C|185
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain I
- 50S RIBOSOMAL PROTEIN L15
- Chain U
- 50S RIBOSOMAL PROTEIN L28
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