IL_3CF5_010
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CF5_010 not in the Motif Atlas
- Homologous match to IL_7A0S_011
- Geometric discrepancy: 0.0719
- The information below is about IL_7A0S_011
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 95
Unit IDs
3CF5|1|X|C|573
3CF5|1|X|C|574
3CF5|1|X|U|575
*
3CF5|1|X|A|584
3CF5|1|X|U|585
3CF5|1|X|G|586
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S RIBOSOMAL PROTEIN L3
- Chain C
- 50S RIBOSOMAL PROTEIN L4
- Chain I
- 50S RIBOSOMAL PROTEIN L15
- Chain N
- 50S RIBOSOMAL PROTEIN L20
- Chain O
- 50S RIBOSOMAL PROTEIN L21
- Chain Y
- 50S RIBOSOMAL PROTEIN L32
Coloring options: