IL_3CF5_012

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_012 not in the Motif Atlas

Homologous match to IL_7A0S_013

Geometric discrepancy: 0.1439

The information below is about IL_7A0S_013

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3CF5|1|X|U|616
3CF5|1|X|U|617
3CF5|1|X|A|618
3CF5|1|X|A|619
3CF5|1|X|G|620
*
3CF5|1|X|C|629
3CF5|1|X|G|630
3CF5|1|X|G|631
3CF5|1|X|A|632
3CF5|1|X|G|633

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4

Chain I

50S RIBOSOMAL PROTEIN L15