IL_3CF5_020
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 3CF5|1|X|G|789, 3CF5|1|X|A|801, 3CF5|1|X|A|802, 3CF5|1|X|C|803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CF5_020 not in the Motif Atlas
- Geometric match to IL_7RQB_023
- Geometric discrepancy: 0.08
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3CF5|1|X|G|788
3CF5|1|X|G|789
3CF5|1|X|A|790
*
3CF5|1|X|U|800
3CF5|1|X|A|801
3CF5|1|X|A|802
3CF5|1|X|C|803
3CF5|1|X|C|804
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain 2
- 50S RIBOSOMAL PROTEIN L34
- Chain A
- 50S RIBOSOMAL PROTEIN L2
- Chain C
- 50S RIBOSOMAL PROTEIN L4
- Chain P
- 50S RIBOSOMAL PROTEIN L22
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