IL_3CF5_023

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*UUA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_023 not in the Motif Atlas

Geometric match to IL_7A0S_024

Geometric discrepancy: 0.2415

The information below is about IL_7A0S_024

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_79144.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

3CF5|1|X|U|860
3CF5|1|X|G|861
*
3CF5|1|X|U|942
3CF5|1|X|U|943
3CF5|1|X|A|944

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain W

50S RIBOSOMAL PROTEIN L30