IL_3CF5_026
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGUAG*CGAAGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CF5_026 not in the Motif Atlas
- Homologous match to IL_7A0S_027
- Geometric discrepancy: 0.129
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
3CF5|1|X|C|870
3CF5|1|X|U|871
3CF5|1|X|G|872
3CF5|1|X|U|873
3CF5|1|X|A|874
3CF5|1|X|G|875
*
3CF5|1|X|C|927
3CF5|1|X|G|928
3CF5|1|X|A|929
3CF5|1|X|A|930
3CF5|1|X|G|931
3CF5|1|X|G|932
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain J
- 50S RIBOSOMAL PROTEIN L16
- Chain S
- 50S RIBOSOMAL PROTEIN L25
- Chain T
- 50S RIBOSOMAL PROTEIN L27
- Chain W
- 50S RIBOSOMAL PROTEIN L30
- Chain Z
- 5S ribosomal RNA; 5S rRNA
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