IL_3CF5_028
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CF5_028 not in the Motif Atlas
- Homologous match to IL_7A0S_029
- Geometric discrepancy: 0.1425
- The information below is about IL_7A0S_029
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.2
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
3CF5|1|X|G|877
3CF5|1|X|C|878
3CF5|1|X|A|879
3CF5|1|X|C|880
3CF5|1|X|U|881
*
3CF5|1|X|A|921
3CF5|1|X|A|922
3CF5|1|X|A|923
3CF5|1|X|C|924
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain J
- 50S RIBOSOMAL PROTEIN L16
- Chain S
- 50S RIBOSOMAL PROTEIN L25
- Chain Z
- 5S ribosomal RNA; 5S rRNA
Coloring options: