IL_3CF5_031

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUCA*UAU

Length

7 nucleotides

Bulged bases

3CF5|1|X|C|1006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_031 not in the Motif Atlas

Geometric match to IL_7A0S_078

Geometric discrepancy: 0.3161

The information below is about IL_7A0S_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

3CF5|1|X|A|1004
3CF5|1|X|U|1005
3CF5|1|X|C|1006
3CF5|1|X|A|1007
*
3CF5|1|X|U|1170
3CF5|1|X|A|1171
3CF5|1|X|U|1172

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain G

50S RIBOSOMAL PROTEIN L13

Chain N

50S RIBOSOMAL PROTEIN L20

Chain O

50S RIBOSOMAL PROTEIN L21

Chain W

50S RIBOSOMAL PROTEIN L30