IL_3CF5_035

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

3CF5|1|X|C|1152, 3CF5|1|X|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_035 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.2176

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

3CF5|1|X|C|1029
3CF5|1|X|U|1030
3CF5|1|X|C|1031
3CF5|1|X|A|1032
3CF5|1|X|G|1033
3CF5|1|X|U|1034
3CF5|1|X|G|1035
*
3CF5|1|X|C|1150
3CF5|1|X|U|1151
3CF5|1|X|C|1152
3CF5|1|X|A|1153
3CF5|1|X|A|1154
3CF5|1|X|G|1155

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6

Chain G

50S RIBOSOMAL PROTEIN L13