IL_3CF5_051

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAUG*CUAAA

Length

10 nucleotides

Bulged bases

3CF5|1|X|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_051 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.2588

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

3CF5|1|X|U|1431
3CF5|1|X|G|1432
3CF5|1|X|A|1433
3CF5|1|X|U|1434
3CF5|1|X|G|1435
*
3CF5|1|X|C|1593
3CF5|1|X|U|1594
3CF5|1|X|A|1595
3CF5|1|X|A|1596
3CF5|1|X|A|1597

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains