IL_3CF5_061

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

3CF5|1|X|A|1964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_061 not in the Motif Atlas

Homologous match to IL_7A0S_064

Geometric discrepancy: 0.1303

The information below is about IL_7A0S_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

3CF5|1|X|G|1761
3CF5|1|X|C|1762
*
3CF5|1|X|G|1963
3CF5|1|X|A|1964
3CF5|1|X|U|1965

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains