IL_3CF5_069

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

3CF5|1|X|A|1921, 3CF5|1|X|U|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_069 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.1522

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

3CF5|1|X|C|1917
3CF5|1|X|G|1918
3CF5|1|X|A|1919
3CF5|1|X|A|1920
3CF5|1|X|A|1921
3CF5|1|X|U|1922
3CF5|1|X|U|1923
3CF5|1|X|C|1924
3CF5|1|X|C|1925
3CF5|1|X|U|1926
3CF5|1|X|U|1927
3CF5|1|X|G|1928
*
3CF5|1|X|C|1944
3CF5|1|X|C|1945
3CF5|1|X|U|1946
3CF5|1|X|G|1947

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains