IL_3CF5_071
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- ACGA*UCUAU
- Length
- 9 nucleotides
- Bulged bases
- 3CF5|1|X|C|2038, 3CF5|1|X|C|2591, 3CF5|1|X|U|2592
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CF5_071 not in the Motif Atlas
- Homologous match to IL_7A0S_074
- Geometric discrepancy: 0.1185
- The information below is about IL_7A0S_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70335.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3CF5|1|X|A|2037
3CF5|1|X|C|2038
3CF5|1|X|G|2039
3CF5|1|X|A|2040
*
3CF5|1|X|U|2590
3CF5|1|X|C|2591
3CF5|1|X|U|2592
3CF5|1|X|A|2593
3CF5|1|X|U|2594
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S RIBOSOMAL PROTEIN L3
- Chain P
- 50S RIBOSOMAL PROTEIN L22
- Chain Y
- 50S RIBOSOMAL PROTEIN L32
Coloring options: