IL_3CF5_083

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_083 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.1288

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

3CF5|1|X|A|2438
3CF5|1|X|U|2439
3CF5|1|X|C|2440
*
3CF5|1|X|G|2468
3CF5|1|X|G|2469
3CF5|1|X|U|2470
3CF5|1|X|U|2471
3CF5|1|X|U|2472

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L16