IL_3CF5_086

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

3CF5|1|X|G|2555, 3CF5|1|X|A|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_086 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.1248

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

3CF5|1|X|C|2489
3CF5|1|X|U|2490
3CF5|1|X|C|2491
*
3CF5|1|X|G|2553
3CF5|1|X|C|2554
3CF5|1|X|G|2555
3CF5|1|X|A|2556
3CF5|1|X|G|2557

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain Y

50S RIBOSOMAL PROTEIN L32