IL_3CF5_098

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_098 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.1019

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

3CF5|1|X|U|2822
3CF5|1|X|G|2823
3CF5|1|X|C|2824
3CF5|1|X|A|2825
3CF5|1|X|C|2826
3CF5|1|X|G|2827
*
3CF5|1|X|U|2840
3CF5|1|X|U|2841
3CF5|1|X|C|2842
3CF5|1|X|A|2843
3CF5|1|X|G|2844

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain K

50S RIBOSOMAL PROTEIN L17

Chain M

50S RIBOSOMAL PROTEIN L19