IL_3CF5_112
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- ACUUUG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 3CF5|1|X|G|1975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CF5_112 not in the Motif Atlas
- Homologous match to IL_7A0S_062
- Geometric discrepancy: 0.1055
- The information below is about IL_7A0S_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 11
Unit IDs
3CF5|1|X|A|1686
3CF5|1|X|C|1687
3CF5|1|X|U|1688
3CF5|1|X|U|1689
3CF5|1|X|U|1690
3CF5|1|X|G|1691
*
3CF5|1|X|C|1973
3CF5|1|X|U|1974
3CF5|1|X|G|1975
3CF5|1|X|U|1976
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S RIBOSOMAL PROTEIN L3
- Chain H
- 50S RIBOSOMAL PROTEIN L14
Coloring options: