IL_3CMA_055

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAC*GCAUAG

Length

11 nucleotides

Bulged bases

3CMA|1|0|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CMA_055 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.083

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

3CMA|1|0|C|1570
3CMA|1|0|G|1571
3CMA|1|0|A|1572
3CMA|1|0|A|1573
3CMA|1|0|C|1574
*
3CMA|1|0|G|1622
3CMA|1|0|C|1623
3CMA|1|0|A|1624
3CMA|1|0|U|1625
3CMA|1|0|A|1626
3CMA|1|0|G|1627

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains