IL_3CMA_082

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCAAG*CGACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CMA_082 not in the Motif Atlas

Homologous match to IL_4V9F_085

Geometric discrepancy: 0.0834

The information below is about IL_4V9F_085

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3CMA|1|0|G|2501
3CMA|1|0|C|2502
3CMA|1|0|A|2503
3CMA|1|0|A|2504
3CMA|1|0|G|2505
*
3CMA|1|0|C|2515
3CMA|1|0|G|2516
3CMA|1|0|A|2517
3CMA|1|0|C|2518
3CMA|1|0|C|2519

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain H

50S ribosomal protein L10e