IL_3CMA_103

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAUAC*GGAAAU*U

Length

13 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CMA|1|9|G|75
3CMA|1|9|G|76
3CMA|1|9|A|77
3CMA|1|9|U|79
3CMA|1|9|A|80
3CMA|1|9|C|81
*
3CMA|1|9|G|101
3CMA|1|9|G|102
3CMA|1|9|A|103
3CMA|1|9|A|104
3CMA|1|9|A|105
3CMA|1|9|U|106
*
3CMA|1|9|U|106

Current chains

Chain 9

5S RIBOSOMAL RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain H

50S ribosomal protein L10e

Chain W

50S ribosomal protein L30P