IL_3CMA_106

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CAAUGUG

Length

12 nucleotides

Bulged bases

3CMA|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CMA_106 not in the Motif Atlas

Homologous match to IL_4V9F_108

Geometric discrepancy: 0.0435

The information below is about IL_4V9F_108

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_65996.1

Basepair signature

cWW-L-cWW-L-tSH-R-cWW

Number of instances in this motif group

4

Unit IDs

3CMA|1|0|C|245
3CMA|1|0|G|246
3CMA|1|0|A|247
3CMA|1|0|A|248
3CMA|1|0|G|249
*
3CMA|1|0|C|260
3CMA|1|0|A|261
3CMA|1|0|A|262
3CMA|1|0|U|263
3CMA|1|0|G|264
3CMA|1|0|U|265
3CMA|1|0|G|266

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e