IL_3CME_076

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

3CME|1|0|A|2291

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CME_076 not in the Motif Atlas

Homologous match to IL_4V9F_079

Geometric discrepancy: 0.2257

The information below is about IL_4V9F_079

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

3CME|1|0|G|2279
3CME|1|0|A|2280
*
3CME|1|0|U|2290
3CME|1|0|A|2291
3CME|1|0|C|2292

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain H

50S ribosomal protein L10e

Chain Q

50S ribosomal protein L21e