IL_3CXC_002

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

3CXC|1|0|A|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_002 not in the Motif Atlas

Homologous match to IL_4V9F_002

Geometric discrepancy: 0.0555

The information below is about IL_4V9F_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

3CXC|1|0|G|33
3CXC|1|0|C|34
*
3CXC|1|0|G|448
3CXC|1|0|A|449
3CXC|1|0|C|450

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4

Chain S

RIBOSOMAL PROTEIN L24

Chain Z

RIBOSOMAL PROTEIN L37E