IL_3CXC_012

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGC*GACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_012 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2149

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

3CXC|1|0|C|287
3CXC|1|0|A|288
3CXC|1|0|G|289
3CXC|1|0|C|290
*
3CXC|1|0|G|362
3CXC|1|0|A|363
3CXC|1|0|C|364
3CXC|1|0|G|365

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN L15E