IL_3CXC_027

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AU*AGU

Length

5 nucleotides

Bulged bases

3CXC|1|0|G|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_027 not in the Motif Atlas

Homologous match to IL_4V9F_026

Geometric discrepancy: 0.0509

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

3CXC|1|0|A|793
3CXC|1|0|U|794
*
3CXC|1|0|A|819
3CXC|1|0|G|820
3CXC|1|0|U|821

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain O

RIBOSOMAL PROTEIN L19E

Chain Y

RIBOSOMAL PROTEIN L37AE