IL_3CXC_056

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAC*GCAUAG

Length

11 nucleotides

Bulged bases

3CXC|1|0|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_056 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.0651

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

3CXC|1|0|C|1570
3CXC|1|0|G|1571
3CXC|1|0|A|1572
3CXC|1|0|A|1573
3CXC|1|0|C|1574
*
3CXC|1|0|G|1622
3CXC|1|0|C|1623
3CXC|1|0|A|1624
3CXC|1|0|U|1625
3CXC|1|0|A|1626
3CXC|1|0|G|1627

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains