IL_3CXC_083

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUC*GGCUU

Length

8 nucleotides

Bulged bases

3CXC|1|0|C|2526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_083 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.1008

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

3CXC|1|0|G|2494
3CXC|1|0|U|2495
3CXC|1|0|C|2496
*
3CXC|1|0|G|2524
3CXC|1|0|G|2525
3CXC|1|0|C|2526
3CXC|1|0|U|2527
3CXC|1|0|U|2528

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

RIBOSOMAL PROTEIN L10E