IL_3CXC_089

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

3CXC|1|0|A|2637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_089 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.2111

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

3CXC|1|0|C|2626
3CXC|1|0|G|2627
*
3CXC|1|0|C|2636
3CXC|1|0|A|2637
3CXC|1|0|G|2638

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 4

5'-R(*CP*CP*A)-3'

Chain A

RIBOSOMAL PROTEIN L2