IL_3CXC_098

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUGCG*UUAAG

Length

11 nucleotides

Bulged bases

3CXC|1|0|A|2890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_098 not in the Motif Atlas

Homologous match to IL_4V9F_099

Geometric discrepancy: 0.0546

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

3CXC|1|0|U|2864
3CXC|1|0|G|2865
3CXC|1|0|U|2866
3CXC|1|0|G|2867
3CXC|1|0|C|2868
3CXC|1|0|G|2869
*
3CXC|1|0|U|2888
3CXC|1|0|U|2889
3CXC|1|0|A|2890
3CXC|1|0|A|2891
3CXC|1|0|G|2892

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain T

RIBOSOMAL PROTEIN L24E