IL_3CXC_100

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

3CXC|1|9|A|3065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_100 not in the Motif Atlas

Homologous match to IL_4V9F_101

Geometric discrepancy: 0.1065

The information below is about IL_4V9F_101

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

3CXC|1|9|C|3015
3CXC|1|9|G|3016
*
3CXC|1|9|C|3064
3CXC|1|9|A|3065
3CXC|1|9|G|3066

Current chains

Chain 9

5S RIBOSOMAL RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

RIBOSOMAL PROTEIN L5

Chain M

RIBOSOMAL PROTEIN L18