IL_3CXC_104

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUAC*GGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_104 not in the Motif Atlas

Homologous match to IL_4V9F_106

Geometric discrepancy: 0.0359

The information below is about IL_4V9F_106

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

3CXC|1|9|G|3075
3CXC|1|9|G|3076
3CXC|1|9|A|3077
3CXC|1|9|G|3078
3CXC|1|9|U|3079
3CXC|1|9|A|3080
3CXC|1|9|C|3081
*
3CXC|1|9|G|3101
3CXC|1|9|G|3102
3CXC|1|9|A|3103
3CXC|1|9|A|3104
3CXC|1|9|A|3105
3CXC|1|9|C|3106

Current chains

Chain 9

5S RIBOSOMAL RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain H

RIBOSOMAL PROTEIN L10E

Chain V

RIBOSOMAL PROTEIN L30