IL_3CXC_109

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAUUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_109 not in the Motif Atlas

Homologous match to IL_4V9F_111

Geometric discrepancy: 0.0429

The information below is about IL_4V9F_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

3CXC|1|0|G|1744
3CXC|1|0|G|1745
3CXC|1|0|A|1746
3CXC|1|0|A|1747
3CXC|1|0|U|1748
3CXC|1|0|U|1749
3CXC|1|0|C|1750
3CXC|1|0|G|1751
3CXC|1|0|G|1752
*
3CXC|1|0|C|2031
3CXC|1|0|U|2032
3CXC|1|0|G|2033
3CXC|1|0|U|2034
3CXC|1|0|C|2035

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain J

RIBOSOMAL PROTEIN L14