IL_3DIG_005

3D structure

PDB id

3DIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO S-(2-aminoethyl)-L-cysteine

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

3DIG|1|X|G|110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DIG_005 not in the Motif Atlas

Geometric match to IL_3DIL_005

Geometric discrepancy: 0.1192

The information below is about IL_3DIL_005

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

3DIG|1|X|G|84
3DIG|1|X|G|85
*
3DIG|1|X|U|109
3DIG|1|X|G|110
3DIG|1|X|C|111

Current chains

Chain X

RNA (174-MER)

Nearby chains