IL_3DIY_006

3D structure

PDB id

3DIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Mn2+ soak

Experimental method

X-RAY DIFFRACTION

Resolution

2.71 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

3DIY|1|A|G|110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DIY_006 not in the Motif Atlas

Geometric match to IL_3DIL_005

Geometric discrepancy: 0.076

The information below is about IL_3DIL_005

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

3DIY|1|A|G|84
3DIY|1|A|G|85
*
3DIY|1|A|U|109
3DIY|1|A|G|110
3DIY|1|A|C|111

Current chains

Chain A

RNA (174-MER)

Nearby chains