IL_3DJ0_006

3D structure

PDB id

3DJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystallization of the Thermotoga maritima lysine riboswitch bound to L-4-oxalysine

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DJ0_006 not in the Motif Atlas

Geometric match to IL_3DIL_006

Geometric discrepancy: 0.0352

The information below is about IL_3DIL_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

3DJ0|1|A|G|115
3DJ0|1|A|G|116
3DJ0|1|A|G|117
*
3DJ0|1|A|C|137
3DJ0|1|A|A|138
3DJ0|1|A|C|139

Current chains

Chain A

RNA (174-MER)

Nearby chains