IL_3DVV_003

3D structure

PDB id

3DVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DVV_003 not in the Motif Atlas

Geometric match to IL_3C3Z_003

Geometric discrepancy: 0.0549

The information below is about IL_3C3Z_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_29925.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

3DVV|1|A|C|15
3DVV|1|A|A|16
3DVV|1|A|C|17
*
3DVV|1|B|G|7
3DVV|1|B|A|8
3DVV|1|B|A|9
3DVV|1|B|G|10

Current chains

Chain A

HIV-1 genomic RNA

Chain B

HIV-1 genomic RNA

Nearby chains