IL_3DVV_004

3D structure

PDB id

3DVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

CAA*U(OMU)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DVV_004 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1123

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

3DVV|1|A|C|20
3DVV|1|A|A|21
3DVV|1|A|A|22
*
3DVV|1|B|U|2
3DVV|1|B|OMU|3
3DVV|1|B|G|4

Current chains

Chain A

HIV-1 genomic RNA

Chain B

HIV-1 genomic RNA

Nearby chains