IL_3DW6_002

3D structure

PDB id

3DW6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modified

Experimental method

X-RAY DIFFRACTION

Resolution

1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DW6_002 not in the Motif Atlas

Geometric match to IL_4NLF_001

Geometric discrepancy: 0.1277

The information below is about IL_4NLF_001

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3DW6|1|A|C|2652
3DW6|1|A|U|2653
3DW6|1|A|A|2654
3DW6|1|A|G|2655
3DW6|1|A|U|2656
3DW6|1|A|A|2657
3DW6|1|A|C|2658
*
3DW6|1|A|G|2663
3DW6|1|A|G|2664
3DW6|1|A|A|2665
3DW6|1|A|C|2666
3DW6|1|A|C|2667
3DW6|1|A|G|2668

Current chains

Chain A

Sarcin/Ricin Domain from E. Coli 23 S rRNA

Nearby chains