IL_3EOH_004

3D structure

PDB id

3EOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined group II intron structure

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GG*UUGAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3EOH_004 not in the Motif Atlas

Geometric match to IL_3IGI_005

Geometric discrepancy: 0.0796

The information below is about IL_3IGI_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_26685.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

3EOH|1|A|G|128
3EOH|1|A|G|129
*
3EOH|1|A|U|234
3EOH|1|A|U|235
3EOH|1|A|G|236
3EOH|1|A|A|237
3EOH|1|A|U|238

Current chains

Chain A

Group IIC intron

Nearby chains