IL_3EOH_011

3D structure

PDB id

3EOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined group II intron structure

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UAUG*CUAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3EOH_011 not in the Motif Atlas

Geometric match to IL_5BTM_002

Geometric discrepancy: 0.0907

The information below is about IL_5BTM_002

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_87739.1

Basepair signature

cWW-tWH-cSH-cWW

Number of instances in this motif group

10

Unit IDs

3EOH|1|A|U|332
3EOH|1|A|A|333
3EOH|1|A|U|334
3EOH|1|A|G|335
*
3EOH|1|A|C|346
3EOH|1|A|U|347
3EOH|1|A|A|348
3EOH|1|A|A|349
3EOH|1|A|G|350

Current chains

Chain A

Group IIC intron

Nearby chains