IL_3G4S_013

3D structure

PDB id

3G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Tiamulin bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUCUCAUC*GUGCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G4S_013 not in the Motif Atlas

Homologous match to IL_4V9F_011

Geometric discrepancy: 0.4583

The information below is about IL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

3G4S|1|0|C|280
3G4S|1|0|U|281
3G4S|1|0|C|282
3G4S|1|0|U|283
3G4S|1|0|C|284
3G4S|1|0|A|285
3G4S|1|0|U|286
3G4S|1|0|C|287
*
3G4S|1|0|G|365
3G4S|1|0|U|366
3G4S|1|0|G|367
3G4S|1|0|C|368
3G4S|1|0|G|369

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e