3D structure

PDB id
3G4S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of Tiamulin bound to the large ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAAUC*GCAACAGC
Length
13 nucleotides
Bulged bases
3G4S|1|0|A|894, 3G4S|1|0|G|898
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3G4S_026 not in the Motif Atlas
Geometric match to IL_4V9F_024
Geometric discrepancy: 0.0734
The information below is about IL_4V9F_024
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

3G4S|1|0|G|765
3G4S|1|0|A|766
3G4S|1|0|A|767
3G4S|1|0|U|768
3G4S|1|0|C|769
*
3G4S|1|0|G|892
3G4S|1|0|C|893
3G4S|1|0|A|894
3G4S|1|0|A|895
3G4S|1|0|C|896
3G4S|1|0|A|897
3G4S|1|0|G|898
3G4S|1|0|C|899

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L37e
Chain C
50S ribosomal protein L4P
Chain L
50S ribosomal protein L15P
Chain M
50S ribosomal protein L15e

Coloring options:


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