IL_3G4S_112

3D structure

PDB id

3G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Tiamulin bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCUU*ACGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G4S_112 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2309

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3G4S|1|0|C|557
3G4S|1|0|C|558
3G4S|1|0|U|559
3G4S|1|0|U|560
*
3G4S|1|0|A|597
3G4S|1|0|C|598
3G4S|1|0|G|599
3G4S|1|0|G|600

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L32e